The Align Document Sets option is available only if the capture profile is configured to used patch codes to create document sets. See Patch Codes.
As an alternative to printing patch pages and scanning them with the batch to create document sets, you can create and insert patch pages directly in Quality Assurance, then use the Align Document Sets option to automatically create the document sets. SeePatch Image Insert.
From the Quality Assurance window, right-click an image in the batch image list and click Document Set Options | Align Document Sets.
If the Patch Page Type in Configure Patch Code Options is set to Delete, the patch pages are deleted.